
A retrospective analysis of patients at Veterans Affairs (VA) hospitals found that influenza and respiratory syncytial virus (RSV) is associated with increased risk of secondary Streptococcus pneumoniae infection but COVID-19 isn't, researchers reported late week in Clinical Infectious Diseases.
The study, led by researchers with the VA Western New York Healthcare System, analyzed data on patients who received care and were tested for S pneumoniae at VA hospitals from January 2015 through March 2025. Patients positive for S pneumoniae were assessed for evidence of prior flu, RSV, and COVID-19 infections. The primary outcome was development of S pneumoniae infection within 30 days after a positive test for flu, RSV, or COVID-19.
Of the 188,172 patients (mean age, 70 years; 96% male) included in the study, 8,165 (4.3%) were positive for S pneumoniae. The incidence of S pneumoniae in patients varied with respiratory viral testing for COVID-19, RSV, and influenza. Among all patients, there were 14,506 cases of positive COVID-19, of which 336 (2.3%) subsequently had S pneumoniae infection, along with 1,349 cases of RSV and 4,504 cases of influenza, of which 132 (9.8%) and 452 (10.0%) involved subsequent positive tests for S pneumoniae, respectively.
Higher risk with flu, RSV
In the multivariable logistic regression analysis, both flu (odds ratio [OR], 2.39; 95% confidence interval [CI], 2.15 to 2.64) and RSV (OR, 2.50; 95% CI, 2.07 to 2.99) more than doubled the odds of subsequent S pneumonia infection. But prior COVID-19 infection decreased the odds by 44% (OR, 0.56; 95% CI, 0.50 to 0.62). Current smokers (OR, 1.09; 95% CI 1.03 to 1.16) and those with chronic obstructive pulmonary disease (OR, 1.36; 95% CI 1.28 to 1.45) were also associated with increased odds of subsequent S pneumoniae.
The study authors say flu or RSV may increase the risk of S pneumoniae infection by damaging the bronchi and lung epithelium, which may create more attachment sites for bacteria. But why COVID-19 was associated with reduced S pneumoniae risk is unclear.
"In the post-viral setting of influenza or RSV, empiric antimicrobial therapy with coverage for S. pneumoniae should be considered in patients presenting with clinical features suggestive of bacterial superinfection," they wrote.